Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001639.1 Kokia drynarioides strain JFW-HI SEQ_113281, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1201
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24


Found at i:935 original size:205 final size:206

Alignment explanation


    Indices: 571--1022  Score: 721
    Period size: 205  Copynumber: 2.2  Consensus size: 206

        561 AAACTACGCG

                      *                                      *               
        571 GTCATCTTCCTGATGAGATACTGAGAAGAAGACCAAATCAAACCCACACTCGATGTGAGTAAATC
          1 GTCATCTTCCCGATGAGATACTGAGAAGAAGACCAAATCAAACCCACACCCGATGTGAGTAAATC

                    *  *                                                     
        636 TTCGAACCCCAGCTTCCTGAAGAGACACTGAGAAGCAGGTCGAAGCAATAAAACGGTTAGCTTCC
         66 TTCGAACCACAACTTCCTGAAGAGACACTGAGAAGCAGGTCGAAGCAATAAAACGGTTAGCTTCC

             *                                                               
        701 TGATGAGATACGAAAAAGTTGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGAAA
        131 TAATGAGATACGAAAAAGTTGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGAAA

                    ** 
        766 CAAACGACGTA
        196 CAAACGACACA

                       *                               * * *                 
        777 GTCATCTTCCCAATGAGATACTGAGAAGAAGACCAAATCAAACTCGCGCCCGATGTGAGTAAATC
          1 GTCATCTTCCCGATGAGATACTGAGAAGAAGACCAAATCAAACCCACACCCGATGTGAGTAAATC

                                *                                            
        842 TTCGAA-CACAACTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAACGGTTAGCTTCC
         66 TTCGAACCACAACTTCCTGAAGAGACACTGAGAAGCAGGTCGAAGCAATAAAACGGTTAGCTTCC

                           *        *                                        
        906 TAATGAGATACTG-AGAAG-TGAATCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGA
        131 TAATGAGATAC-GAAAAAGTTG-ACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGA

                         
        969 AACAAACGACACA
        194 AACAAACGACACA

                                           *    *    
        982 GTCATCTTCCCGATGAGATACTGAGAAGAAGGCCAAGTCAA
          1 GTCATCTTCCCGATGAGATACTGAGAAGAAGACCAAATCAA

       1023 TGAAACCAGA


Statistics
Matches: 227,  Mismatches: 17, Indels: 5
        0.91            0.07        0.02

Matches are distributed among these distances:
 204    2  0.01
 205  159  0.70
 206   66  0.29

ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20


Consensus pattern (206 bp):   
GTCATCTTCCCGATGAGATACTGAGAAGAAGACCAAATCAAACCCACACCCGATGTGAGTAAATC
TTCGAACCACAACTTCCTGAAGAGACACTGAGAAGCAGGTCGAAGCAATAAAACGGTTAGCTTCC
TAATGAGATACGAAAAAGTTGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGAAA
CAAACGACACA
Done.