Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001642.1 Kokia drynarioides strain JFW-HI SEQ_113286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7211
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Found at i:87 original size:16 final size:15

Alignment explanation


    Indices: 62--96  Score: 52
    Period size: 16  Copynumber: 2.3  Consensus size: 15

         52 ATATTTTCTT

                            
         62 TTTAAATTAAAATAAA
          1 TTTAAATTAAAAT-AA

                 *         
         78 TTTAATTTAAAATAA
          1 TTTAAATTAAAATAA

                
         93 TTTA
          1 TTTA

         97 TTTCTGAGTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15    6  0.33
  16   12  0.67

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (15 bp):   
TTTAAATTAAAATAA

Found at i:1409 original size:3 final size:3

Alignment explanation


    Indices: 1401--1428  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

       1391 TGAAAAATTG

                                                 
       1401 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T

       1429 GGTTTGTTAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TAT

Done.