Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001650.1 Kokia drynarioides strain JFW-HI SEQ_113296, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4458
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:566 original size:11 final size:12

Alignment explanation


    Indices: 536--565  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        526 TAAAATTATT

                      * 
        536 CATTTTTACTTA
          1 CATTTTTACTCA

                        
        548 CATTTTTACTCA
          1 CATTTTTACTCA

                  
        560 CATTTT
          1 CATTTT

        566 AATAATACAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57


Consensus pattern (12 bp):   
CATTTTTACTCA

Found at i:814 original size:5 final size:6

Alignment explanation


    Indices: 781--811  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        771 AAGAAGAAAT

                                                 
        781 GGGAGG GGGAGG GGGAGG GGGA-G GGGAGG GG
          1 GGGAGG GGGAGG GGGAGG GGGAGG GGGAGG GG

        812 AGGAGAGAAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   5    5  0.21
   6   19  0.79

ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00


Consensus pattern (6 bp):   
GGGAGG
Done.