Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001657.1 Kokia drynarioides strain JFW-HI SEQ_113309, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1712
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:935 original size:38 final size:38

Alignment explanation


    Indices: 887--966  Score: 115
    Period size: 38  Copynumber: 2.1  Consensus size: 38

        877 GAGTCTATCC

                       * *   *                    
        887 AGAATCGCACCTAGAATTGTCACTGCTTGACGATGTCT
          1 AGAATCGCACCCAAAATAGTCACTGCTTGACGATGTCT

                 *                *               
        925 AGAATTGCACCCAAAATAGTCATTGCTTGACGATGTCT
          1 AGAATCGCACCCAAAATAGTCACTGCTTGACGATGTCT

                
        963 AGAA
          1 AGAA

        967 ATGTCGCTGC


Statistics
Matches: 37,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  38   37  1.00

ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28


Consensus pattern (38 bp):   
AGAATCGCACCCAAAATAGTCACTGCTTGACGATGTCT
Done.