Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001660.1 Kokia drynarioides strain JFW-HI SEQ_113314, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2252
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36


Found at i:1398 original size:28 final size:27

Alignment explanation


    Indices: 1336--1398  Score: 63
    Period size: 28  Copynumber: 2.3  Consensus size: 27

       1326 GTTTACATGA

                            *  *       
       1336 AATGATTATTTAACTATTAGACAAAAT
          1 AATGATTATTTAACTAATAAACAAAAT

               *          *           *  
       1363 ACAAGATTATTTAATTACATAAACAATAT
          1 A-ATGATTATTTAACTA-ATAAACAAAAT

                   
       1392 AATGATT
          1 AATGATT

       1399 TTGTCTTTTA


Statistics
Matches: 28,  Mismatches: 6, Indels: 3
        0.76            0.16        0.08

Matches are distributed among these distances:
  27    1  0.04
  28   18  0.64
  29    9  0.32

ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37


Consensus pattern (27 bp):   
AATGATTATTTAACTAATAAACAAAAT
Done.