Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001661.1 Kokia drynarioides strain JFW-HI SEQ_113315, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 997

Length: 1662
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39


Found at i:1406 original size:28 final size:29

Alignment explanation


    Indices: 1344--1406  Score: 67
    Period size: 28  Copynumber: 2.2  Consensus size: 29

       1334 GTTTACATGG

                             *           
       1344 AATGATTATTTAACTATTAGAAAAAATAC
          1 AATGATTATTTAACTATCAGAAAAAATAC

                         *     *   *    *
       1373 AA-GATTATTTAATTA-CATAAACAATAT
          1 AATGATTATTTAACTATCAGAAAAAATAC

                   
       1400 AATGATT
          1 AATGATT

       1407 TTGTCTTTTA


Statistics
Matches: 28,  Mismatches: 5, Indels: 3
        0.78            0.14        0.08

Matches are distributed among these distances:
  27   10  0.36
  28   16  0.57
  29    2  0.07

ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37


Consensus pattern (29 bp):   
AATGATTATTTAACTATCAGAAAAAATAC
Done.