Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001663.1 Kokia drynarioides strain JFW-HI SEQ_113319, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2104
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28


Found at i:1714 original size:20 final size:19

Alignment explanation


    Indices: 1689--1738  Score: 66
    Period size: 20  Copynumber: 2.6  Consensus size: 19

       1679 TTTTTTAAAA

                        *     * 
       1689 AATAAAAATAAATAAAATGT
          1 AATAAAAATAAACAAAA-CT

                               
       1709 AATAAAAATAAACAAAACT
          1 AATAAAAATAAACAAAACT

                        
       1728 AAT-AAAATAAA
          1 AATAAAAATAAA

       1739 ATTGTAGGAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  18    8  0.29
  19    4  0.14
  20   16  0.57

ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20


Consensus pattern (19 bp):   
AATAAAAATAAACAAAACT

Found at i:1806 original size:21 final size:22

Alignment explanation


    Indices: 1765--1806  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1755 AAAACACATA

                *     *           
       1765 AAATGAAAGGTTTTAAAAAAAG
          1 AAATAAAAGGATTTAAAAAAAG

                                
       1787 AAATAAAAGGATTTAAAAAA
          1 AAATAAAAGGATTTAAAAAA

       1807 CACAAAATTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21


Consensus pattern (22 bp):   
AAATAAAAGGATTTAAAAAAAG
Done.