Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001668.1 Kokia drynarioides strain JFW-HI SEQ_113327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7025
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35


Found at i:1135 original size:19 final size:19

Alignment explanation


    Indices: 1111--1153  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       1101 AAACATAAAT

                                
       1111 TAAATACAAAT-TTAAATAA
          1 TAAATA-AAATCTTAAATAA

                   *          *
       1130 TAAATAATATCTTAAATAT
          1 TAAATAAAATCTTAAATAA

                 
       1149 TAAAT
          1 TAAAT

       1154 CCTAATAAAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  18    3  0.14
  19   18  0.86

ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37


Consensus pattern (19 bp):   
TAAATAAAATCTTAAATAA

Found at i:1368 original size:2 final size:2

Alignment explanation


    Indices: 1361--1385  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1351 CATACTCTTA

                                                 
       1361 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       1386 ATCAATATCC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.