Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001672.1 Kokia drynarioides strain JFW-HI SEQ_113334, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4489
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36


Found at i:79 original size:5 final size:5

Alignment explanation


    Indices: 56--113  Score: 62
    Period size: 5  Copynumber: 10.6  Consensus size: 5

         46 AAAAAAATTA

                                                 *                    
         56 TTATAT TTATT TTCAATT TTATT TTATT TTATC TTATT TTATT TTCAATT
          1 TTAT-T TTATT TT--ATT TTATT TTATT TTATT TTATT TTATT TT--ATT

                     
        106 TTATT TTA
          1 TTATT TTA

        114 GTTATGCACT


Statistics
Matches: 46,  Mismatches: 2, Indels: 9
        0.81            0.04        0.16

Matches are distributed among these distances:
   5   32  0.70
   6    4  0.09
   7   10  0.22

ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71


Consensus pattern (5 bp):   
TTATT
Done.