Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000168.1 Kokia drynarioides strain JFW-HI SEQ_110838, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2295
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34


Found at i:1702 original size:24 final size:24

Alignment explanation


    Indices: 1669--1715  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1659 GTTAAGAGTA

                       *             
       1669 AAAATTGTCAGTGCAAATGTAATAT
          1 AAAATTGTCAGAGCAAAT-TAATAT

                                   
       1694 AAAA-TGTCAGAGCAAATTAATA
          1 AAAATTGTCAGAGCAAATTAATA

       1716 AAAGATTAAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  23    5  0.24
  24   12  0.57
  25    4  0.19

ACGTcount: A:0.49, C:0.09, G:0.15, T:0.28


Consensus pattern (24 bp):   
AAAATTGTCAGAGCAAATTAATAT
Done.