Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001681.1 Kokia drynarioides strain JFW-HI SEQ_113352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1122
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31


Found at i:409 original size:87 final size:87

Alignment explanation


    Indices: 305--526  Score: 345
    Period size: 87  Copynumber: 2.6  Consensus size: 87

        295 CCGGAAGCCA

                       *             *           *                           
        305 AAAGGGTACTTATGAGTTCAGGGGAAGCAGCATCTCCTGAATCGGAAGAGGAGAATCCGTTTGAT
          1 AAAGGGTACTTTTGAGTTCAGGGGAGGCAGCATCTCCAGAATCGGAAGAGGAGAATCCGTTTGAT

                    *             
        370 AGCATGCCGCCTCCAGAAACCG
         66 AGCATGCCACCTCCAGAAACCG

                                                            *         *      
        392 AAAGGGTACTTTTGAGTTCAGGGGAGGCAGCATCTCCAGAATCGGAAGGGGAGAATCCTTTTGAT
          1 AAAGGGTACTTTTGAGTTCAGGGGAGGCAGCATCTCCAGAATCGGAAGAGGAGAATCCGTTTGAT

            *             *     * 
        457 GGCATGCCACCTCCGGAAACTG
         66 AGCATGCCACCTCCAGAAACCG

                                       *      *             
        479 AAAGGGTACTTTTGAGTTCAGGGGAGGTAGCATCCCCAGAATCGGAAG
          1 AAAGGGTACTTTTGAGTTCAGGGGAGGCAGCATCTCCAGAATCGGAAG

        527 TAGAAGCTCC


Statistics
Matches: 124,  Mismatches: 11, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  87  124  1.00

ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21


Consensus pattern (87 bp):   
AAAGGGTACTTTTGAGTTCAGGGGAGGCAGCATCTCCAGAATCGGAAGAGGAGAATCCGTTTGAT
AGCATGCCACCTCCAGAAACCG
Done.