Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001682.1 Kokia drynarioides strain JFW-HI SEQ_113353, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10800
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31

Warning! 6 characters in sequence are not A, C, G, or T


Found at i:4199 original size:13 final size:13

Alignment explanation


    Indices: 4181--4205  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       4171 TCCAAAGATA

                         
       4181 AAGAAAAAGAAAC
          1 AAGAAAAAGAAAC

                        
       4194 AAGAAAAAGAAA
          1 AAGAAAAAGAAA

       4206 ATCTGTATCA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00


Consensus pattern (13 bp):   
AAGAAAAAGAAAC
Done.