Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001689.1 Kokia drynarioides strain JFW-HI SEQ_113365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86512

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1125--1151
3
9.0
3
100
0
54
0
33
0
66
0.92
1822--1873
27
1.9
27
88
0
77
44
7
1
46
1.43
2109--2186
11
7.5
11
69
16
58
37
1
0
61
1.04
3720--3746
8
3.4
8
100
0
54
11
48
0
40
1.39
8731--8785
29
2.0
29
85
7
78
67
0
1
30
1.01
27031--27093
29
2.2
30
80
8
76
31
11
25
31
1.91
27112--27271
59
2.7
59
78
8
159
40
3
23
32
1.73
27112--27262
30
5.1
30
68
12
98
40
3
25
30
1.74
28364--28455
3
29.7
3
70
8
51
36
3
4
55
1.36
28369--28451
12
6.7
12
74
8
76
36
3
4
55
1.39
29112--29187
6
13.0
6
77
10
77
53
2
1
42
1.23
29112--29187
11
6.5
12
76
10
77
53
2
1
42
1.23
29113--29178
24
2.8
25
86
9
93
53
3
1
42
1.25
29100--29187
17
5.1
17
82
5
104
53
3
1
42
1.25
29607--30197
98
6.0
98
81
4
620
15
23
21
39
1.91
29678--30197
50
10.5
50
72
7
357
14
23
20
40
1.90
37185--37271
6
15.0
6
71
15
67
52
3
1
42
1.25
37180--37228
18
2.8
18
87
3
73
51
2
0
46
1.12
37186--37260
23
3.2
24
78
12
93
52
4
1
42
1.28
37186--37271
23
3.7
22
75
18
77
53
3
1
41
1.25
38876--38902
13
2.1
13
100
0
54
55
7
0
37
1.28
42089--42133
17
2.6
17
85
3
63
40
2
2
55
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42103--42198
6
15.5
6
69
18
63
40
2
6
51
1.39
42107--42149
11
3.8
11
81
6
59
34
0
4
60
1.17
42124--42165
17
2.5
17
92
7
68
38
0
4
57
1.20
42103--42156
23
2.3
23
100
0
108
40
0
3
55
1.17
43571--43817
30
8.4
29
71
15
143
40
29
2
27
1.69
43541--43860
59
5.4
59
81
9
309
39
28
2
29
1.71
43594--43846
29
8.6
28
71
14
138
39
29
2
28
1.69
43594--43885
59
5.0
60
81
8
318
38
28
3
30
1.72
46182--46206
2
12.5
2
100
0
50
48
0
0
52
1.00
48749--48860
59
1.9
59
92
0
188
43
7
4
44
1.51
54589--54659
31
2.3
31
86
11
94
43
19
14
22
1.87
54849--54950
52
2.0
52
90
0
159
49
28
14
7
1.71
61963--62012
14
3.2
16
75
18
61
26
26
12
36
1.91
62703--62733
2
15.5
2
100
0
62
51
0
0
48
1.00
63323--63364
21
1.9
23
90
9
70
61
0
11
26
1.30
74416--74440
4
6.2
4
100
0
50
0
24
0
76
0.80
75693--75773
36
2.2
36
93
0
135
43
18
17
20
1.88
75752--75794
21
2.0
21
86
0
59
60
9
11
18
1.57
75716--75825
57
1.9
57
88
0
166
50
16
13
20
1.78
75773--75849
36
2.1
36
85
0
100
45
23
12
18
1.84
77045--77092
24
2.0
24
84
4
62
47
2
4
45
1.33
85707--86111
29
13.7
30
76
8
278
35
4
26
34
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85707--86111
30
13.7
30
76
9
325
35
4
26
34
1.76
85707--86105
59
6.8
58
79
8
351
36
4
25
34
1.76

Tables:   1

The End!