genome.fa.s169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000169.1 Kokia drynarioides strain JFW-HI SEQ_110839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41176

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1563--1760	93	2.1	94	97	1	371	50	14	21	13	1.77
1864--1907	19	2.3	20	84	7	56	50	0	0	50	1.00
2943--2981	17	2.4	17	91	4	62	30	0	12	56	1.37
3657--3692	3	11.7	3	88	5	54	63	2	0	33	1.08
3660--3690	16	1.9	16	93	0	53	61	3	0	35	1.12
4699--5082	29	13.2	28	71	18	202	35	25	3	35	1.73
4699--5077	59	6.5	58	80	6	392	35	25	3	35	1.73
4885--5181	29	10.2	29	70	15	159	34	26	6	32	1.82
4763--5163	117	3.4	114	82	8	384	34	25	4	35	1.77
9810--9850	20	2.0	20	90	0	64	51	2	7	39	1.43
16152--16237	17	5.1	17	77	5	84	41	0	2	55	1.12
18059--18194	29	4.5	30	78	9	136	36	22	2	38	1.69
18158--18230	37	2.0	37	86	5	103	31	24	2	41	1.69
18212--18470	29	8.8	29	70	11	134	37	24	2	34	1.70
18244--18370	64	2.0	64	90	1	202	41	25	2	29	1.68
18198--18370	29	5.7	30	74	9	140	38	26	2	32	1.71
18509--18577	29	2.4	29	85	0	84	33	34	7	24	1.83
21727--21780	27	2.0	27	100	0	108	29	25	14	29	1.95
23657--23777	13	9.3	12	72	15	73	78	3	14	3	1.01
23657--23746	14	6.7	13	76	9	74	80	3	13	3	0.97
23673--23755	24	3.5	23	75	19	75	79	3	13	3	1.00
23650--23776	36	3.5	36	76	16	111	77	3	14	3	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24770--25123	99	3.6	99	77	5	315	34	16	30	18	1.93
24677--25123	49	9.1	49	78	3	274	33	16	30	18	1.94
24675--25117	246	1.8	246	81	4	563	33	16	30	18	1.94
25328--25450	39	3.2	39	72	17	119	24	31	18	25	1.98
25319--25491	78	2.2	79	78	3	179	26	28	17	27	1.98
25902--26104	86	2.3	87	84	2	266	33	15	25	25	1.95
25700--26236	296	1.8	296	88	0	815	35	16	22	24	1.95
25996--26411	209	2.0	209	88	0	627	37	17	22	22	1.93
26839--26912	17	4.4	16	75	11	67	41	1	2	54	1.23
26844--26899	11	5.0	11	76	4	58	39	1	1	57	1.20
28060--28098	17	2.2	18	90	4	62	79	0	10	10	0.94
28066--28099	11	3.0	11	91	4	50	82	0	8	8	0.85
28744--29051	30	10.5	28	71	15	117	34	26	4	34	1.77
28778--28950	30	6.0	29	73	14	124	34	26	2	36	1.71
28746--29126	59	6.5	59	78	10	329	33	26	4	35	1.76
28836--29199	29	12.3	29	71	14	221	34	27	3	35	1.72
32456--32551	41	2.4	42	81	10	110	29	2	6	62	1.31
41136--41168	6	5.7	6	85	7	50	42	0	0	57	0.98
41127--41176	17	2.8	18	90	9	84	40	2	0	58	1.10

Tables:   1

The End!