Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001697.1 Kokia drynarioides strain JFW-HI SEQ_113379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 787

Length: 1312
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40


Found at i:526 original size:216 final size:215

Alignment explanation


    Indices: 5--1310  Score: 1353
    Period size: 216  Copynumber: 6.1  Consensus size: 215

          1 TGAG

                            *                        *           *           
          5 TTAAAAACTTA-TTACTTGAGAATTGTTTCTCTCTTTGTTCATGGACGAACTTTCGAACTTGTCA
          1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCA

                               *         *              *    *          *  * 
         69 AACTTTTACAAGTTATTTTTTAACTTCGGTTCCCTT-AAGTATTAAACAAGATCCAATT-TTTAG
         66 AACTTTTACAAGTTATTTTATAACTTCGGAT-CCTTAAAGTATTCAACACGATCC-ATTCCTTCG

                                   *   *       *                             
        132 AGCAA-TTTTCTGAACATTCCATCCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
        129 AGCAATTTTTC-GAACATTCCATGC-TCGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTT

            * *            *        
        196 CGAAAAC-AGTTTTGTTCTTTGAA
        192 TGCAAACAAGTTTTGGTCTTTGAA

              * *                   *       *     **  * *  *    *   *        
        219 TTCAGAACTTATTTACGTGAGAATGGTATT-TGTCTTTCATCATAGATGAACGT-CTAAGCTTGT
          1 TTAAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTTGTTCTTGGACGAACTTCCGAA-CTTGT

                       **                *            *  *  *                
        282 CAAACTTTTACTTGTTATTTTATAACTTCAGATCCTTAAAGTGTTGAAGACGATCCATTCCTTCG
         64 CAAACTTTTACAAGTTATTTTATAACTTCGGATCCTTAAAGTATTCAACACGATCCATTCCTTCG

                       *          * *         *   *                     *    
        347 AGCAATTTTTCAAACATTCCATTCCCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCGTTTT
        129 AGCAATTTTTCGAACATTCCATGCTC-GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTT

              *                 *  
        412 GCTAACAAGTTTTGGTCTTTAAA
        193 GCAAACAAGTTTTGGTCTTTGAA

                                *                   *     *      *        *  
        435 TTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTTGTTTTTGGATGAACTTTCGAACTTGCCA
          1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCA

                   * *         *        **   *    *    *    *        *   *   
        500 AACTTTTTCGAGTTATTTTTTAACTTCGTTTCCCTAAACTATTAAACAAGATCCATTGCTTAGAG
         66 AACTTTTACAAGTTATTTTATAACTTCGGATCCTTAAAGTATTCAACACGATCCATTCCTTCGAG

                                                *              **           *
        565 CAATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAACTTGTCATTTTGT
        131 CAATTTTTCGAACATTCCATGCTCG-GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGC

                       *         
        630 AAACAAGTTTTTGTCTTTGAA
        195 AAACAAGTTTTGGTCTTTGAA

                                                          *                  
        651 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGAAGAACTTCCGAACTTGTCA
          1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCA

                *         *                  *          * *      *    *      
        716 AACTATTACAAGTTCTTTTATAACTTCGGATCCGTAAAGTATTCCAGACGATCTATTCTTTCGAG
         66 AACTTTTACAAGTTATTTTATAACTTCGGATCCTTAAAGTATTCAACACGATCCATTCCTTCGAG

                              * *            *                          **   
        781 CAA-TTTTCTGAACATTCAACGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCACGTTG
        131 CAATTTTTC-GAACATTCCATGCTCG-GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG

             *    *               
        845 CGAACATGTTTTGGTCTTTGAA
        194 CAAACAAGTTTTGGTCTTTGAA

                         *          *     * *                        *   *   
        867 TTAAAAACTTATTGACGTGAGAATAGTTTCCCACTTTGTTCTTGGACGAACTTCCGATCTTATCA
          1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCA

                   *     * *        *  * *              *              *    *
        932 AACTTTTTCTAA-ATCTTTTATAAATTTGAATCCTTAAAG-ACTCCAACACGATCCATTTCTTCA
         66 AACTTTTAC-AAGTTATTTTATAACTTCGGATCCTTAAAGTA-TTCAACACGATCCATTCCTTCG

              *       *                      *                 *             
        995 AGTAATTTTTTGAACATTCCATGCTCGGTAAATTACATCATTTGGTCTAAAAAGTTTGTCATTTT
        129 AGCAATTTTTCGAACATTCCATGCTCGG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTTT

                                   
       1060 GCAAACAAGTTTTGGTCTTTGAA
        193 GCAAACAAGTTTTGGTCTTTGAA

            *                        *           *  *          *             
       1083 ATAAAAACTTATTTACGTGAGAATTATTTCTCTCTTTCTTGTTGGACGAACATCCGAACTTGTCA
          1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCA

                            *        *  *  *                                 
       1148 AACTTTTACTGAA--TCTTTTATAAATTGGGTTCCTTAAAGTATTCAACA-GATCCATTCC-TCT
         66 AACTTTTAC--AAGTTATTTTATAACTTCGGATCCTTAAAGTATTCAACACGATCCATTCCTTC-

                   *  *        *   *                                     *   
       1209 GAGCAATATTCCGAACATTTCATACTCGGCAAATCACATCATTTGGTCTAAATAGTTTGTCTTTT
        128 GAGCAATTTTTCGAACATTCCATGCTCGG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTT

                         **        *
       1274 TGCAAACAAGTTTCAGTCTTTGAG
        192 TGCAAACAAGTTTTGGTCTTTGAA

                         
       1298 TTAAAAACTTATT
          1 TTAAAAACTTATT

       1311 AC


Statistics
Matches: 902,  Mismatches: 171, Indels: 37
        0.81            0.15        0.03

Matches are distributed among these distances:
 214   21  0.02
 215  241  0.27
 216  628  0.70
 217   12  0.01

ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40


Consensus pattern (215 bp):   
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCA
AACTTTTACAAGTTATTTTATAACTTCGGATCCTTAAAGTATTCAACACGATCCATTCCTTCGAG
CAATTTTTCGAACATTCCATGCTCGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGCA
AACAAGTTTTGGTCTTTGAA

Done.