Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001700.1 Kokia drynarioides strain JFW-HI SEQ_113386, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5450
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34


Found at i:5262 original size:22 final size:22

Alignment explanation


    Indices: 5237--5279  Score: 68
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       5227 CAATGTCGTG

                                  
       5237 ACATTGGGAAATGGATGTCGCA
          1 ACATTGGGAAATGGATGTCGCA

                      *   *      
       5259 ACATTGGGAAGTGGGTGTCGC
          1 ACATTGGGAAATGGATGTCGC

       5280 GGCACTGTAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.26, C:0.14, G:0.37, T:0.23


Consensus pattern (22 bp):   
ACATTGGGAAATGGATGTCGCA
Done.