genome.fa.s1703.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001703.1 Kokia drynarioides strain JFW-HI SEQ_113392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  232222

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712--741	2	15.0	2	100	0	60	50	0	0	50	1.00
7416--7466	27	2.0	26	85	14	70	41	7	1	49	1.43
8775--8822	16	3.0	15	76	11	51	60	0	2	37	1.09
13211--13321	12	9.3	12	73	2	80	9	5	18	67	1.37
13213--13321	47	2.3	48	83	1	130	9	5	17	67	1.37
13208--13302	24	4.0	24	88	2	138	8	7	16	67	1.39
13472--13517	21	2.2	21	84	7	58	26	0	8	65	1.21
15971--16031	16	3.7	16	76	12	52	59	3	1	36	1.24
25180--25260	40	2.0	40	97	0	153	35	11	20	32	1.88
31711--31814	52	2.0	53	98	1	201	48	9	9	32	1.69
34044--34083	19	2.0	20	85	4	55	32	0	15	52	1.43
34014--34274	140	1.9	139	87	2	389	34	5	13	46	1.67
35427--35512	24	3.5	24	75	10	93	41	0	2	55	1.12
35432--35522	27	3.5	26	79	11	107	41	1	2	54	1.19
35440--35512	14	5.6	13	70	15	53	41	0	1	57	1.07
40576--40637	21	2.7	23	76	20	67	58	4	1	35	1.29
41261--41287	6	4.5	6	100	0	54	14	0	0	85	0.61
56418--56462	18	2.4	19	85	10	58	33	0	0	66	0.92
75863--75982	58	2.1	58	96	0	222	48	18	0	33	1.48
76566--76607	21	2.0	22	85	4	59	21	11	2	64	1.38
85243--85279	14	2.5	15	91	4	58	45	0	0	54	1.00
87838--88042	61	3.4	59	76	12	170	27	16	19	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87924--88042	56	2.1	56	83	10	143	25	17	22	34	1.96
92097--92494	86	4.6	86	91	5	610	42	5	4	48	1.43
93500--93532	14	2.3	15	85	15	52	24	3	0	72	0.98
94908--94968	30	2.0	30	87	6	88	26	8	4	60	1.45
95837--96014	61	2.9	59	84	7	214	37	16	17	28	1.92
104501--104562	33	1.9	31	93	3	97	0	35	0	62	0.95
105227--105259	14	2.3	15	89	5	50	24	0	33	42	1.55
109836--109906	36	2.0	35	86	8	99	33	0	26	39	1.57
111034--111131	42	2.4	39	78	14	101	51	3	3	42	1.33
111033--111125	37	2.4	38	81	10	102	49	3	4	43	1.38
111458--111494	18	2.0	19	89	5	58	54	0	0	45	1.00
123464--123494	11	2.8	11	90	0	53	64	0	35	0	0.94
124095--124140	2	23.0	2	95	0	83	0	47	0	52	1.00
126574--126619	14	3.2	14	77	17	58	28	0	2	69	1.00
126574--126636	24	2.4	26	84	12	76	28	0	1	69	0.97
126602--126636	17	2.0	18	88	5	54	25	0	0	74	0.82
126963--126997	16	2.2	16	89	0	52	71	0	0	28	0.86
131414--131703	143	2.0	143	96	0	535	37	11	17	32	1.86
131841--131886	7	6.6	7	100	0	92	30	43	13	13	1.81
138231--138539	158	2.0	158	89	1	476	35	15	13	35	1.87
140472--140515	21	2.1	21	95	0	79	22	9	29	38	1.85
143373--143468	47	2.0	47	97	0	183	21	16	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146545--146659	58	2.0	58	91	0	185	49	16	0	33	1.46
179525--179565	22	1.9	21	90	5	64	34	21	9	34	1.87
183193--183242	19	2.6	19	87	3	64	40	16	0	44	1.47
185828--185958	28	4.5	29	74	6	95	36	12	8	42	1.73
185895--185970	30	2.5	31	81	12	95	34	14	6	44	1.71
187765--187798	10	3.6	9	92	8	50	50	0	0	50	1.00
195923--195995	24	3.0	24	95	0	128	28	21	17	31	1.97
200349--200373	11	2.3	11	100	0	50	44	0	0	56	0.99
200352--200401	14	3.7	14	73	7	50	48	0	0	52	1.00
200361--200430	30	2.5	28	90	6	106	48	0	0	51	1.00
200391--200433	21	2.0	23	90	9	72	53	0	0	46	1.00
201140--201198	29	2.0	30	84	15	79	50	3	0	45	1.18
204624--204650	2	13.5	2	100	0	54	48	0	0	51	1.00
207322--207351	14	2.1	14	93	0	51	90	0	6	3	0.56
207322--207355	13	2.5	14	90	9	61	85	0	8	5	0.75
209343--209391	23	2.0	24	88	7	73	8	14	0	77	0.98
210338--210423	46	1.9	44	81	9	102	56	0	3	39	1.16
211330--211357	14	2.0	14	100	0	56	14	0	0	85	0.59
216351--216395	20	2.2	21	88	4	65	55	4	4	35	1.40
217885--217911	10	2.7	10	100	0	54	92	0	0	7	0.38
219418--219454	18	2.1	19	90	10	60	18	0	8	72	1.08
222489--222518	13	2.4	13	94	5	53	36	0	6	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225366--225403	6	6.3	6	93	0	67	18	0	50	31	1.47
227897--228116	18	12.5	17	71	17	87	31	3	3	61	1.29
227890--228100	70	3.0	70	92	0	341	30	3	3	62	1.29
227930--228114	19	10.6	17	72	13	85	30	3	4	61	1.33
227912--228103	36	5.5	35	73	14	159	31	3	3	61	1.30
231927--231954	6	4.7	6	100	0	56	35	46	0	17	1.49

Tables:   1

The End!