Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001704.1 Kokia drynarioides strain JFW-HI SEQ_113393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1213
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39


Found at i:424 original size:216 final size:215

Alignment explanation


    Indices: 1--1213  Score: 1230
    Period size: 216  Copynumber: 5.6  Consensus size: 215

                        *    *    *      *     *                     *       
          1 ACAAACTTTTACCAGTTGTTCTCTAACTTTGGTTCATTAAAGTATTCATGACGATCCTTTCCTTC
          1 ACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCTTAAAGTATTCATGACGATCCATTCCTTC

                                           *  *         *               *    
         66 GAGCAATTTTCCGAACATTGCAA-GCACGGGGAACCGCATCATTCTG-CTTAAACAGTTTTTCAT
         66 GAGCAATTTTCCGAACATT-CAATGCACGGGAAATCGCATCATTTTGTC-TAAACAGTTTGTCAT

                   *             * *   *     *             *                 
        129 TTTCTAATCAACTTTTGGTCTATAAATTAAAAAGTTATTTACGTGAGTGTTGTTTCTCTCATTGT
        129 TTTCTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTCTCTC-TTGT

                                   
        194 TCTTGGACGAACTTCCGAACTTG
        193 TCTTGGACGAACTTCCGAACTTG

                 *                 *      *                          *       
        217 ACAAAGTTTTACGAGTTCTTCTAAAACTTCAGTTCCTTAAAGTATTCATGACGATCCGTTCCTTC
          1 ACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCTTAAAGTATTCATGACGATCCATTCCTTC

            *                                                   **           
        282 TAGCAATTTTCCGAACATTCAATGCACGGGAAATCGCATCATTTTGTCTAAATTGTTTGTCATTT
         66 GAGCAATTTTCCGAACATTCAATGCACGGGAAATCGCATCATTTTGTCTAAACAGTTTGTCATTT

                          **                *      * *                       
        347 TCTAAACAACTTTTTATCTTTGAATGAAAAACCTATTTATGCGAGAGTTGTCTT-TCTCTTGCTT
        131 TCTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGT-TTCTCTCTTG-TT

               *  *                
        411 CTTAGATGAACTTCC-AAGCTTG
        194 CTTGGACGAACTTCCGAA-CTTG

                       *         *       *    *  *          *   *           *
        433 ACAAACTTTTATGAGTTCTTCAATAACTTTGGTTTCTCAAAGTATTCAGGACAATCCATTCCTTA
          1 ACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCTTAAAGTATTCATGACGATCCATTCCTTC

                  *     *        *    **    *   *        *       * *         
        498 GAG-AAATTTCTTGAACATTCCATGCTTGGGATATCTCATCATTTGGTCTAAATACTTTGTCATT
         66 GAGCAATTTTC-CGAACATTCAATGCACGGGAAATCGCATCATTTTGTCTAAACAGTTTGTCATT

                    *                             *                 *        
        562 TTCTAAACTACTTTTGGTCTTTGAATGAAAAACTTATTCACGTGAGAGTTGTTTCTATCTTGGTT
        130 TTCTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTT-GTT

               *   *     *        
        627 CTTAGACAAACTTTCGAACTTG
        194 CTTGGACGAACTTCCGAACTTG

            *                   *         *     *      *        *            
        649 GCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCATAAAGTTTTCATGACCATCCATTCCTTC
          1 ACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCTTAAAGTATTCATGACGATCCATTCCTTC

                  *                   **                  *                  
        714 GAGCAAATTTCCGAACATTTC-ATGCTTGGGAAATCGCATCATTTTTTCTAAACTA-TTTGTCAT
         66 GAGCAATTTTCCGAACA-TTCAATGCACGGGAAATCGCATCATTTTGTCTAAAC-AGTTTGTCAT

              **                            *         *     *     *   *     *
        777 TTGGTAAACAACTTTTGGTCTTTGAATGAAAAGCTTATTTACATGAGAATTGTTCCTCCCTTAGA
        129 TTTCTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTT-GT

             *     *       **      
        842 TATTGGATGAACTTCTAAACTTG
        193 TCTTGGACGAACTTCCGAACTTG

                     *                      *  *                             
        865 ACAAACTTTGACGAG---TTCTATAACTTCGGCTCTTTAAAGTATTCATGACGATCCATTCCTTC
          1 ACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCTTAAAGTATTCATGACGATCCATTCCTTC

                       *        *     *         *         *      *           
        927 GAGCAATTTTCTGAACATTCCATGCTTC-GGAAATCACATCATTTTCTCTAAATAGTTTGTCATT
         66 GAGCAATTTTCCGAACATTCAATGC-ACGGGAAATCGCATCATTTTGTCTAAACAGTTTGTCATT

             **  *             *      *                    *       *        *
        991 TGGTATACAACTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAATT-TATTGTCTCTTGGA
        130 TTCTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGT-TTCTCTCTT-GT

              *                    *
       1055 TCATGGAC-AAGCTTCCGAACTTT
        193 TCTTGGACGAA-CTTCCGAACTTG

                        *    *           *     *               *     *       
       1078 ACAAACTTTTACCAGTTGTTCTATAACTTTGGTTCATTAAAGTATTCATGATGATCCTTTCCTTC
          1 ACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCTTAAAGTATTCATGACGATCCATTCCTTC

                                           *  *         *  *           *     
       1143 GAGCAATTTTCCGAACATTCCAA-GCACGGGGAACCGCATCATTCTGCCTAAACAGTTTTTCATT
         66 GAGCAATTTTCCGAACATT-CAATGCACGGGAAATCGCATCATTTTGTCTAAACAGTTTGTCATT

                   
       1207 TTCTAAA
        130 TTCTAAA


Statistics
Matches: 823,  Mismatches: 152, Indels: 44
        0.81            0.15        0.04

Matches are distributed among these distances:
 212    7  0.01
 213  170  0.21
 214    1  0.00
 215   17  0.02
 216  609  0.74
 217   19  0.02

ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39


Consensus pattern (215 bp):   
ACAAACTTTTACGAGTTCTTCTATAACTTCGGTTCCTTAAAGTATTCATGACGATCCATTCCTTC
GAGCAATTTTCCGAACATTCAATGCACGGGAAATCGCATCATTTTGTCTAAACAGTTTGTCATTT
TCTAAACAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGTTCT
TGGACGAACTTCCGAACTTG

Done.