Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001718.1 Kokia drynarioides strain JFW-HI SEQ_113415, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2512
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:2247 original size:33 final size:33

Alignment explanation


    Indices: 2210--2307  Score: 115
    Period size: 33  Copynumber: 3.0  Consensus size: 33

       2200 AGGCGAACAG

                            *  *             
       2210 AATGGTGAAGCTGCCCCGAGAGATGTTCCAATC
          1 AATGGTGAAGCTGCCCTGATAGATGTTCCAATC

                      *   *           *      
       2243 AATGGTGAAGTTGCTCTGATAGATGTGCCAATC
          1 AATGGTGAAGCTGCCCTGATAGATGTTCCAATC

             *  *      *          *         
       2276 ATTGATGAAGCCGCCCTGATAGTTGTTCCAAT
          1 AATGGTGAAGCTGCCCTGATAGATGTTCCAAT

       2308 AACTTATGTT


Statistics
Matches: 53,  Mismatches: 12, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  33   53  1.00

ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28


Consensus pattern (33 bp):   
AATGGTGAAGCTGCCCTGATAGATGTTCCAATC
Done.