Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001726.1 Kokia drynarioides strain JFW-HI SEQ_113427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1728
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34


Found at i:836 original size:55 final size:55

Alignment explanation


    Indices: 762--871  Score: 220
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        752 TAGGAGAAAA

                                                                   
        762 AATATTTGTGATGGCGAACATTGTGAACTAGAAAAAGATTACAATGAGAATTTTT
          1 AATATTTGTGATGGCGAACATTGTGAACTAGAAAAAGATTACAATGAGAATTTTT

                                                                   
        817 AATATTTGTGATGGCGAACATTGTGAACTAGAAAAAGATTACAATGAGAATTTTT
          1 AATATTTGTGATGGCGAACATTGTGAACTAGAAAAAGATTACAATGAGAATTTTT

        872 TCCTTGAGTT


Statistics
Matches: 55,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  55   55  1.00

ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33


Consensus pattern (55 bp):   
AATATTTGTGATGGCGAACATTGTGAACTAGAAAAAGATTACAATGAGAATTTTT
Done.