genome.fa.s1727.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001727.1 Kokia drynarioides strain JFW-HI SEQ_113428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131725

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990--1055	23	2.9	23	93	0	114	13	19	25	40	1.89
3744--3802	29	2.0	29	83	0	73	28	6	28	35	1.83
11789--11831	23	1.9	22	85	4	59	30	0	0	69	0.88
34462--34504	17	2.5	18	88	11	72	13	9	0	76	1.01
37426--37465	19	2.2	18	86	4	53	62	2	7	27	1.35
39639--39686	20	2.3	22	78	7	55	47	6	0	45	1.27
41414--41518	53	2.0	53	88	3	158	32	12	3	51	1.57
42564--42604	19	2.1	20	95	4	75	46	0	26	26	1.53
42851--42890	21	1.9	21	89	0	62	60	10	7	22	1.54
43272--43323	27	1.9	27	88	7	79	38	0	36	25	1.56
43380--43417	9	4.2	9	86	0	58	31	10	10	47	1.72
52273--52302	5	6.0	5	100	0	60	20	0	20	60	1.37
52443--52471	15	2.0	15	93	6	51	31	20	0	48	1.50
54107--54216	29	3.8	29	80	4	123	43	23	13	19	1.86
64801--64839	12	3.2	12	88	0	60	69	0	30	0	0.89
67753--67780	3	9.3	3	100	0	56	35	0	0	64	0.94
68195--68633	144	3.0	144	84	8	586	44	4	7	43	1.54
69145--69187	16	2.7	15	86	10	59	27	4	0	67	1.10
69364--69463	48	2.1	47	94	1	173	30	13	3	54	1.54
98162--98215	15	3.4	16	76	20	51	64	0	31	3	1.11
104000--104047	24	2.0	24	95	0	87	47	22	0	29	1.51
104210--104260	22	2.3	22	90	6	77	33	15	29	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106072--106628	278	2.0	277	93	1	965	38	23	10	28	1.87
108432--108477	25	2.0	25	87	12	71	41	8	13	36	1.75
113645--114412	102	7.5	102	84	4	840	35	16	18	29	1.93
113636--114345	306	2.3	303	85	4	978	35	17	18	28	1.93
114139--114456	52	6.2	51	69	10	191	34	16	17	30	1.93
118488--118522	18	1.9	18	94	0	61	71	2	17	8	1.23
123160--123219	31	1.9	31	100	0	120	60	8	6	25	1.50

Tables:   1

The End!