Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001736.1 Kokia drynarioides strain JFW-HI SEQ_113442, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1007
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35


Found at i:31 original size:23 final size:23

Alignment explanation


    Indices: 1--126  Score: 121
    Period size: 23  Copynumber: 5.4  Consensus size: 23

                           *       
          1 AACAGAGAGCACACACAGTGCTA
          1 AACAGAGAGCACACAAAGTGCTA

                     *         *   
         24 AACAGAGAGTACACAAAGTACTA
          1 AACAGAGAGCACACAAAGTGCTA

            **  *                  
         47 GTCAAAGAGCACACAAAGTGCTA
          1 AACAGAGAGCACACAAAGTGCTA

             *               *      
         70 ATCAGAGAGCACAC-AATTGCTAA
          1 AACAGAGAGCACACAAAGTGCT-A

                            * *      
         93 TAACAGAGAGCACGA-GACGTGCTA
          1 -AACAGAGAGCAC-ACAAAGTGCTA

                      
        117 AACAGAGAGC
          1 AACAGAGAGC

        127 GCGCTAGTGT


Statistics
Matches: 85,  Mismatches: 14, Indels: 8
        0.79            0.13        0.07

Matches are distributed among these distances:
  22    6  0.07
  23   61  0.72
  24   12  0.14
  25    6  0.07

ACGTcount: A:0.44, C:0.21, G:0.22, T:0.12


Consensus pattern (23 bp):   
AACAGAGAGCACACAAAGTGCTA
Done.