Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: NTFQ01001739.1 Kokia drynarioides strain JFW-HI SEQ_113449, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2324 ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35 Found at i:807 original size:46 final size:46 Alignment explanation
Indices: 740--853 Score: 228 Period size: 46 Copynumber: 2.5 Consensus size: 46 730 TGTGTTAATA 740 CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC 1 CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC 786 CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC 1 CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC 832 CAAAATGGAACCATCACAAGTT 1 CAAAATGGAACCATCACAAGTT 854 TAATCTAACA Statistics Matches: 68, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 46 68 1.00 ACGTcount: A:0.42, C:0.22, G:0.15, T:0.21 Consensus pattern (46 bp): CAAAATGGAACCATCACAAGTTCACAACTGAAGGTTTCAAAATGTC Done.