Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000174.1 Kokia drynarioides strain JFW-HI SEQ_110846, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2836
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:2592 original size:14 final size:14

Alignment explanation


    Indices: 2573--2603  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       2563 ATAATAGATT

                          
       2573 TTTAATTAAATAAA
          1 TTTAATTAAATAAA

                     *    
       2587 TTTAATTAATTAAA
          1 TTTAATTAAATAAA

               
       2601 TTT
          1 TTT

       2604 TTTAAACCTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (14 bp):   
TTTAATTAAATAAA
Done.