Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001748.1 Kokia drynarioides strain JFW-HI SEQ_113461, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3594
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:236 original size:16 final size:16

Alignment explanation


    Indices: 215--247  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        205 AACTAAACAA

                            
        215 CCCTATTCCATTACAG
          1 CCCTATTCCATTACAG

                            
        231 CCCTATTCCATTACAG
          1 CCCTATTCCATTACAG

             
        247 C
          1 C

        248 GAACCAAACG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.24, C:0.39, G:0.06, T:0.30


Consensus pattern (16 bp):   
CCCTATTCCATTACAG
Done.