Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001752.1 Kokia drynarioides strain JFW-HI SEQ_113466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13711
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:81 original size:5 final size:5

Alignment explanation


    Indices: 66--112  Score: 51
    Period size: 5  Copynumber: 9.4  Consensus size: 5

         56 CATTATTTGC

                   *              *   *                              
         66 TTATA TCATA TTATA TTATG TTTTAA TTATA TT-TA TTATA TTATA TT
          1 TTATA TTATA TTATA TTATA TTAT-A TTATA TTATA TTATA TTATA TT

        113 TACACATCAT


Statistics
Matches: 34,  Mismatches: 6, Indels: 4
        0.77            0.14        0.09

Matches are distributed among these distances:
   4    4  0.12
   5   27  0.79
   6    3  0.09

ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62


Consensus pattern (5 bp):   
TTATA

Found at i:110 original size:14 final size:14

Alignment explanation


    Indices: 74--114  Score: 52
    Period size: 14  Copynumber: 3.1  Consensus size: 14

         64 GCTTATATCA

                        * 
         74 TATTATATTAT-GT
          1 TATTATATTATATT

                          
         87 T-TTA-ATTATATT
          1 TATTATATTATATT

                          
         99 TATTATATTATATT
          1 TATTATATTATATT

              
        113 TA
          1 TA

        115 CACATCATAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 5
        0.80            0.03        0.17

Matches are distributed among these distances:
  11    5  0.21
  12    5  0.21
  13    4  0.17
  14   10  0.42

ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63


Consensus pattern (14 bp):   
TATTATATTATATT
Done.