Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000176.1 Kokia drynarioides strain JFW-HI SEQ_110850, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7121
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:4781 original size:26 final size:26

Alignment explanation


    Indices: 4734--4783  Score: 66
    Period size: 26  Copynumber: 1.9  Consensus size: 26

       4724 TATGTTAATT

                       *              
       4734 AGAATTTAAATGAGAAACTAAAAAAC
          1 AGAATTTAAATAAGAAACTAAAAAAC

                     *               
       4760 AGAATTTAACTAAGAGAA-TAAAAA
          1 AGAATTTAAATAAGA-AACTAAAAA

       4784 CCAAAATATT


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  26   19  0.90
  27    2  0.10

ACGTcount: A:0.62, C:0.06, G:0.12, T:0.20


Consensus pattern (26 bp):   
AGAATTTAAATAAGAAACTAAAAAAC

Found at i:7032 original size:3 final size:3

Alignment explanation


    Indices: 7026--7050  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       7016 AAAACCCTTC

                                             
       7026 GTT GTT GTT GTT GTT GTT GTT GTT G
          1 GTT GTT GTT GTT GTT GTT GTT GTT G

       7051 AGATGAATCG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.00, G:0.36, T:0.64


Consensus pattern (3 bp):   
GTT

Done.