Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001769.1 Kokia drynarioides strain JFW-HI SEQ_113493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3784
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31


Found at i:2602 original size:22 final size:22

Alignment explanation


    Indices: 2572--2622  Score: 66
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       2562 AAGTAGCTAA

                          *        
       2572 AAAATAAAAGAAAACCAAAATAT
          1 AAAA-AAAAGAAAAACAAAATAT

                    *      *      
       2595 AAAAAAAATAAAAACTAAATAT
          1 AAAAAAAAGAAAAACAAAATAT

                  
       2617 AAAAAA
          1 AAAAAA

       2623 TTATATGGAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  22   21  0.84
  23    4  0.16

ACGTcount: A:0.78, C:0.06, G:0.02, T:0.14


Consensus pattern (22 bp):   
AAAAAAAAGAAAAACAAAATAT

Found at i:2607 original size:16 final size:18

Alignment explanation


    Indices: 2568--2613  Score: 51
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       2558 ACAAAAGTAG

                              
       2568 CTAAAAAATAAAAGAAAA
          1 CTAAAAAATAAAAGAAAA

             *    *           
       2586 CCAAAATATAAAA-AAAA
          1 CTAAAAAATAAAAGAAAA

                   *    
       2603 -TAAAAACTAAA
          1 CTAAAAAATAAA

       2614 TATAAAAAAT


Statistics
Matches: 23,  Mismatches: 5, Indels: 2
        0.77            0.17        0.07

Matches are distributed among these distances:
  16    8  0.35
  17    4  0.17
  18   11  0.48

ACGTcount: A:0.76, C:0.09, G:0.02, T:0.13


Consensus pattern (18 bp):   
CTAAAAAATAAAAGAAAA
Done.