Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001777.1 Kokia drynarioides strain JFW-HI SEQ_113501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4483
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:336 original size:197 final size:196

Alignment explanation


    Indices: 1--370  Score: 713
    Period size: 197  Copynumber: 1.9  Consensus size: 196

                                                                             
          1 CAATGCATTCACTCGTTTGGTTTGCCCATCGGTTTGTGGATGCATGCTAGTGGAAAAGTTCAAGT
          1 CAATGCATTCACTCGTTTGGTTTGCCCATCGGTTTGTGGATGCATGCTAGTGGAAAAGTTCAAGT

                                    *                                        
         66 CTGAGCCCATTAACTTGAAAAATTTCGTCCAGAACCGGCCCGTGAATCGCCCTTCTCTATCTCTT
         66 CTGAGCCCATTAACTTGAAAAATTCCGTCCAGAACCGGCCCGTGAATCGCCCTTCTCTATCTCTT

                                                                             
        131 ATGATAGACTATGGCACTCCCCAATACTTCACCACATGTCTCAAGAANGTTGTAAGTACGTCTCT
        131 ATGATAGACTATGGCACTCCCCAATACTTCACCACATGTCTCAAGAA-GTTGTAAGTACGTCTCT

              
        196 AA
        195 AA

                                                       *                     
        198 CAATGCATTCACTCGTTTGGTTTGCCCATCGGTTTGTGGATGCGTGCTAGTGGAAAAGTTCAAGT
          1 CAATGCATTCACTCGTTTGGTTTGCCCATCGGTTTGTGGATGCATGCTAGTGGAAAAGTTCAAGT

                                                                             
        263 CTGAGCCCATTAACTTGAAAAATTCCGTCCAGAACCGGCCCGTGAATCGCCCTTCTCTATCTCTT
         66 CTGAGCCCATTAACTTGAAAAATTCCGTCCAGAACCGGCCCGTGAATCGCCCTTCTCTATCTCTT

                                                       
        328 ATGATAGACTATGGCACTCCCCAATACTTCACCACATGTCTCA
        131 ATGATAGACTATGGCACTCCCCAATACTTCACCACATGTCTCA

        371 GGAACAAACA


Statistics
Matches: 171,  Mismatches: 2, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 197  171  1.00

ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30


Consensus pattern (196 bp):   
CAATGCATTCACTCGTTTGGTTTGCCCATCGGTTTGTGGATGCATGCTAGTGGAAAAGTTCAAGT
CTGAGCCCATTAACTTGAAAAATTCCGTCCAGAACCGGCCCGTGAATCGCCCTTCTCTATCTCTT
ATGATAGACTATGGCACTCCCCAATACTTCACCACATGTCTCAAGAAGTTGTAAGTACGTCTCTA
A
Done.