genome.fa.s1778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001778.1 Kokia drynarioides strain JFW-HI SEQ_113502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250292

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145--305	80	2.0	78	86	4	225	34	18	16	31	1.92
3658--3733	38	2.0	38	100	0	152	28	10	36	23	1.88
18214--18267	21	2.7	20	83	13	74	9	22	0	68	1.17
18159--18417	96	2.7	95	86	7	310	11	23	2	61	1.43
18265--18417	45	3.3	45	71	13	146	11	22	3	62	1.44
18299--18368	26	2.7	26	66	2	61	10	20	2	67	1.33
19162--19222	3	20.3	3	93	0	104	0	31	3	65	1.09
20302--20334	17	1.9	17	88	11	50	27	0	6	66	1.15
20516--20613	50	2.0	49	82	9	121	38	14	10	36	1.80
20529--20665	50	2.7	50	81	5	150	35	16	10	37	1.83
25460--25557	50	1.9	52	87	4	146	37	11	16	34	1.84
25697--25729	17	1.9	17	88	11	50	66	6	0	27	1.15
28949--29078	30	4.3	30	92	0	206	26	24	25	23	2.00
33432--33487	24	2.3	24	84	6	69	67	7	17	7	1.37
35350--35394	21	2.1	21	83	0	54	68	4	6	20	1.29
38145--38179	15	2.2	17	90	10	56	11	17	5	65	1.43
39633--39709	36	2.1	36	85	0	100	23	15	23	37	1.93
40106--40150	17	2.5	19	82	10	60	44	15	2	37	1.59
40109--40150	19	2.4	16	85	14	57	45	16	2	35	1.61
40200--40424	101	2.2	102	83	7	280	36	12	14	37	1.84
40206--40424	50	4.3	50	79	8	228	36	12	14	36	1.84
40404--40512	31	3.4	31	64	22	80	39	13	11	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41048--41221	87	2.0	87	98	0	339	23	6	9	60	1.51
57825--57856	6	5.3	6	92	0	55	3	12	31	53	1.54
58797--58840	13	3.2	13	79	17	52	63	4	4	27	1.33
66923--66947	2	12.5	2	100	0	50	52	0	0	48	1.00
70262--70456	96	2.0	96	100	0	390	43	18	16	21	1.88
71723--71752	16	1.9	15	93	6	51	36	0	26	36	1.57
73291--73360	18	3.9	17	81	7	68	24	21	25	28	1.99
77013--77083	19	3.7	19	82	0	97	22	18	33	25	1.96
78849--78880	16	2.0	16	100	0	64	25	37	12	25	1.91
98716--98790	27	2.8	28	86	9	88	30	28	21	20	1.98
98734--98790	27	2.1	27	93	6	98	33	26	19	21	1.97
109527--109585	26	2.3	27	79	8	68	25	23	22	28	1.99
110055--110089	15	2.3	15	90	0	52	0	22	0	77	0.78
123639--123686	23	2.1	23	96	0	87	29	22	8	39	1.83
126829--126870	15	2.8	15	82	7	50	35	7	23	33	1.82
134746--134803	29	2.0	29	96	0	107	27	15	10	46	1.78
136670--136715	19	2.4	21	76	23	57	15	4	4	76	1.11
138274--138298	13	1.9	13	100	0	50	16	28	48	8	1.74
138928--139287	30	12.0	30	79	5	282	36	23	1	37	1.66
139356--139393	18	2.0	19	90	10	60	21	10	0	68	1.19
142367--142408	21	2.0	21	85	4	57	45	14	26	14	1.83
147920--148242	77	4.2	78	76	7	300	23	31	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147903--148492	39	15.2	37	71	13	245	23	31	19	25	1.98
147903--148242	155	2.2	155	80	6	384	23	31	19	25	1.98
147941--148457	116	4.5	117	78	8	404	22	32	19	25	1.98
147903--148488	78	7.6	78	77	5	420	23	31	19	25	1.98
150639--150929	29	9.9	29	76	8	221	38	23	2	36	1.67
150669--150944	87	3.2	85	77	10	263	38	23	1	36	1.66
150997--151042	23	2.1	22	84	11	60	19	8	2	69	1.25
156493--156534	21	2.0	22	85	4	59	64	4	19	11	1.44
157876--157988	55	2.1	55	98	0	217	40	15	7	36	1.75
161730--161773	18	2.4	18	84	0	61	22	18	6	52	1.69
163941--163966	11	2.4	11	100	0	52	50	7	7	34	1.60
164828--164887	21	2.9	21	74	0	57	35	21	13	30	1.92
165570--165673	36	2.9	35	86	2	145	24	25	13	36	1.92
166436--166488	14	3.4	14	72	22	52	43	22	15	18	1.87
166437--166506	33	2.1	33	100	0	140	42	21	15	20	1.88
174084--174178	46	2.1	46	84	7	124	36	28	4	30	1.76
174160--174231	16	4.5	16	84	3	92	31	27	5	34	1.80
174372--174398	11	2.5	11	100	0	54	37	7	0	55	1.28
175234--175336	36	2.9	35	80	1	125	27	24	12	35	1.91
178413--178474	22	2.8	23	78	7	74	35	20	17	25	1.95
191162--191314	55	2.7	58	77	13	167	50	1	3	43	1.31
194097--194131	16	2.2	16	100	0	70	20	22	0	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195189--195270	31	2.7	31	76	12	89	42	6	12	39	1.67
195200--195270	31	2.3	31	83	7	92	47	5	11	35	1.63
195314--195364	26	2.0	26	88	3	77	41	5	3	49	1.45
201629--201657	14	2.1	14	100	0	58	48	6	6	37	1.57
223933--223973	20	2.0	20	85	4	55	70	0	29	0	0.87
223922--223976	24	2.3	23	79	17	58	69	0	29	1	0.99
235759--235838	39	2.1	39	97	0	151	30	16	0	53	1.43
236858--236908	12	3.8	12	77	22	57	60	0	0	39	0.97
236804--236940	29	4.7	29	84	4	161	51	1	0	47	1.09
236804--236940	57	2.3	59	84	7	181	51	1	0	47	1.09
240080--240142	33	1.9	33	100	0	126	36	14	12	36	1.84

Tables:   1

The End!