Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001779.1 Kokia drynarioides strain JFW-HI SEQ_113505, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3589
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.30


Found at i:3333 original size:15 final size:15

Alignment explanation


    Indices: 3313--3363  Score: 50
    Period size: 15  Copynumber: 3.3  Consensus size: 15

       3303 CATAAAAAAA

                           
       3313 TAAATATAAAATTAT
          1 TAAATATAAAATTAT

                           *
       3328 TAAATATTAAAA-TAA
          1 TAAATA-TAAAATTAT

                           * 
       3343 TATAATATAAATATTTT
          1 TA-AATATAAA-ATTAT

                
       3360 TAAA
          1 TAAA

       3364 AAATAATATG


Statistics
Matches: 29,  Mismatches: 3, Indels: 7
        0.74            0.08        0.18

Matches are distributed among these distances:
  15   14  0.48
  16   12  0.41
  17    3  0.10

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (15 bp):   
TAAATATAAAATTAT

Found at i:3352 original size:31 final size:31

Alignment explanation


    Indices: 3305--3363  Score: 84
    Period size: 30  Copynumber: 1.9  Consensus size: 31

       3295 GATTTTTTCA

                                           
       3305 TAAAAAAATAAATATAAA-ATTATTAAATAT
          1 TAAAAAAATAAATATAAATATTATTAAATAT

                 *                 *     
       3335 TAAAATAATATAATATAAATATTTTTAAA
          1 TAAAAAAATA-AATATAAATATTATTAAA

       3364 AAATAATATG


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  30    9  0.36
  31    8  0.32
  32    8  0.32

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (31 bp):   
TAAAAAAATAAATATAAATATTATTAAATAT
Done.