Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001788.1 Kokia drynarioides strain JFW-HI SEQ_113520, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2762
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36


Found at i:1898 original size:28 final size:28

Alignment explanation


    Indices: 1845--1900  Score: 94
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1835 CTAGTAACAG

                                 *      
       1845 GCATGACCTTTGGGTCAACAGGGAGTAA
          1 GCATGACCTTTGGGTCAACAGAGAGTAA

                                *       
       1873 GCATGACCTTTGGGTCAACATAGAGTAA
          1 GCATGACCTTTGGGTCAACAGAGAGTAA

       1901 ATCAGATATC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  28   26  1.00

ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23


Consensus pattern (28 bp):   
GCATGACCTTTGGGTCAACAGAGAGTAA
Done.