Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001794.1 Kokia drynarioides strain JFW-HI SEQ_113527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5854
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32


Found at i:4376 original size:26 final size:25

Alignment explanation


    Indices: 4313--4398  Score: 109
    Period size: 26  Copynumber: 3.4  Consensus size: 25

       4303 CGTGCCTAGA

                                   * 
       4313 CAGTATATTGCTCTTACGAGCCAAT
          1 CAGTATATTGCTCTTACGAGCCATT

               *                      
       4338 CAGAATATTGCTCTTACGAGCCAGTT
          1 CAGTATATTGCTCTTACGAGCCA-TT

                    *      *          
       4364 CAGTATATCGCTCTTTCGAGCCAATT
          1 CAGTATATTGCTCTTACGAGCC-ATT

            *        
       4390 TAGTATATT
          1 CAGTATATT

       4399 TGTCTAGTCT


Statistics
Matches: 52,  Mismatches: 7, Indels: 3
        0.84            0.11        0.05

Matches are distributed among these distances:
  25   22  0.42
  26   29  0.56
  27    1  0.02

ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35


Consensus pattern (25 bp):   
CAGTATATTGCTCTTACGAGCCATT
Done.