Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001804.1 Kokia drynarioides strain JFW-HI SEQ_113539, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14803
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34


Found at i:10216 original size:31 final size:30

Alignment explanation


    Indices: 10159--10281  Score: 94
    Period size: 30  Copynumber: 4.1  Consensus size: 30

      10149 TAAAATGAGG

                    *                     
      10159 TTTTAGGTTCCTTAAAAGTTGGAAAAAAAA
          1 TTTTAGGTCCCTTAAAAGTTGGAAAAAAAA

                                 * *       
      10189 TTTTAGGTCCCTTTAAAA-TTAGTAAAAAAA
          1 TTTTAGGTCCC-TTAAAAGTTGGAAAAAAAA

                    *  *       *           
      10219 TTGTT-GGACCTTTAAAAGCT--AAAAAAAA
          1 TT-TTAGGTCCCTTAAAAGTTGGAAAAAAAA

             *  *   *                       
      10247 -ATTGGGACCCCTTAAAAGTTGGTAAAAAAAA
          1 TTTTAGG-TCCCTTAAAAGTTGG-AAAAAAAA

                
      10278 TTTT
          1 TTTT

      10282 CGCCTTCAAA


Statistics
Matches: 72,  Mismatches: 12, Indels: 16
        0.72            0.12        0.16

Matches are distributed among these distances:
  26    2  0.03
  27    2  0.03
  28   17  0.24
  29    6  0.08
  30   27  0.38
  31   16  0.22
  32    2  0.03

ACGTcount: A:0.43, C:0.10, G:0.15, T:0.33


Consensus pattern (30 bp):   
TTTTAGGTCCCTTAAAAGTTGGAAAAAAAA

Done.