Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000181.1 Kokia drynarioides strain JFW-HI SEQ_110856, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5575
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.35


Found at i:4041 original size:17 final size:17

Alignment explanation


    Indices: 3979--4041  Score: 58
    Period size: 19  Copynumber: 3.5  Consensus size: 17

       3969 TTAAGTAACA

                               
       3979 TTTATTAATTTTAATTATT
          1 TTTA-TAATTTTAA-TATT

                              
       3998 TTT-T-ATTCTTAATATT
          1 TTTATAATT-TTAATATT

                         *     
       4014 TTTGAATAATTTTTATATT
          1 TTT--ATAATTTTAATATT

                     
       4033 TTTATAATT
          1 TTTATAATT

       4042 ATTTTAAAAA


Statistics
Matches: 38,  Mismatches: 1, Indels: 12
        0.75            0.02        0.24

Matches are distributed among these distances:
  16   10  0.26
  17   11  0.29
  19   14  0.37
  20    3  0.08

ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67


Consensus pattern (17 bp):   
TTTATAATTTTAATATT
Done.