Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001826.1 Kokia drynarioides strain JFW-HI SEQ_113570, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 818

Length: 1364
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40


Found at i:726 original size:123 final size:123

Alignment explanation


    Indices: 477--786  Score: 354
    Period size: 123  Copynumber: 2.5  Consensus size: 123

        467 TATTTCTTTA

                          *      *       *   *  *        *                *  
        477 TATCTCATCAGGAAAATGATCGCTTTATTTCTTCGACCCACTTCTTTGTATCTCATCAAGAAAAT
          1 TATCTCATCAGGAAGATGA-CTCTTTATTGCTTTGATCCACTTCTCTGTATCTCATCAAGAAGAT

                      *  *                 **           *              
        542 AGGGGTTTGATGTTTCACTCGCATTGAACTTTGCTTCATTGATTTAGCCTACTTCTCTG
         65 AGGGGTTTGAAGTCTCACTCGCATTGAACTTCACTTCATTGATTGAGCCTACTTCTCTG

               *                               *                      *      
        601 TATGTCATCAGGAAGATGACCTCTTTATTGCTTTGGTCCACTTCTCTGTATCTCATCAGGAAGAT
          1 TATCTCATCAGGAAGATGA-CTCTTTATTGCTTTGATCCACTTCTCTGTATCTCATCAAGAAGAT

                             *   *     *                   *            
        666 -GGGGTTTGAAGTCTCATTCGTATTGAGCTTCACTTCATTGATTGAGTCTACTTC-CTTG
         65 AGGGGTTTGAAGTCTCACTCGCATTGAACTTCACTTCATTGATTGAGCCTACTTCTC-TG

                      *              *    *   *                  *         
        724 TATCTCATCAAGAAGATGACTGCTTAATTGATTTAATCCACTTCTCTGTATCTAATCAAGAAG
          1 TATCTCATCAGGAAGATGACT-CTTTATTGCTTTGATCCACTTCTCTGTATCTCATCAAGAAG

        787 GCAAATTTGG


Statistics
Matches: 156,  Mismatches: 28, Indels: 5
        0.83            0.15        0.03

Matches are distributed among these distances:
 122    3  0.02
 123   99  0.63
 124   54  0.35

ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38


Consensus pattern (123 bp):   
TATCTCATCAGGAAGATGACTCTTTATTGCTTTGATCCACTTCTCTGTATCTCATCAAGAAGATA
GGGGTTTGAAGTCTCACTCGCATTGAACTTCACTTCATTGATTGAGCCTACTTCTCTG
Done.