Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000183.1 Kokia drynarioides strain JFW-HI SEQ_110862, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2594
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35


Found at i:2493 original size:18 final size:18

Alignment explanation


    Indices: 2472--2530  Score: 50
    Period size: 18  Copynumber: 3.2  Consensus size: 18

       2462 TTTTGGCTTT

                              
       2472 TTTATAATTTTTACAATA
          1 TTTATAATTTTTACAATA

                 *         *    
       2490 TTTAACAATTTCTTATAAT-
          1 TTT-ATAATTT-TTACAATA

                   *           
       2509 TTTATTATTTTTTACAA-A
          1 TTTA-TAATTTTTACAATA

                
       2527 TTTA
          1 TTTA

       2531 AAAAAATAAA


Statistics
Matches: 32,  Mismatches: 5, Indels: 8
        0.71            0.11        0.18

Matches are distributed among these distances:
  18   13  0.41
  19   13  0.41
  20    6  0.19

ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58


Consensus pattern (18 bp):   
TTTATAATTTTTACAATA
Done.