Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001839.1 Kokia drynarioides strain JFW-HI SEQ_113588, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1513
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.37


Found at i:919 original size:24 final size:24

Alignment explanation


    Indices: 890--947  Score: 64
    Period size: 23  Copynumber: 2.5  Consensus size: 24

        880 AGAAATAATC

                                   *
        890 TTTCAATTAAACTCTATTTAATTG
          1 TTTCAATTAAACTCTATTTAATTA

                       *   *    *   
        914 TTTCAA-TAAATTCTGTTTATTTA
          1 TTTCAATTAAACTCTATTTAATTA

            *          
        937 CTTCAATTAAA
          1 TTTCAATTAAA

        948 TTATGTTTAT


Statistics
Matches: 28,  Mismatches: 5, Indels: 2
        0.80            0.14        0.06

Matches are distributed among these distances:
  23   18  0.64
  24   10  0.36

ACGTcount: A:0.34, C:0.12, G:0.03, T:0.50


Consensus pattern (24 bp):   
TTTCAATTAAACTCTATTTAATTA

Found at i:941 original size:23 final size:24

Alignment explanation


    Indices: 915--959  Score: 74
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        905 ATTTAATTGT

                        *           
        915 TTCAA-TAAATTCTGTTTATTTAC
          1 TTCAATTAAATTATGTTTATTTAC

                                  
        938 TTCAATTAAATTATGTTTATTT
          1 TTCAATTAAATTATGTTTATTT

        960 GTTTGAGCTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  23    5  0.25
  24   15  0.75

ACGTcount: A:0.31, C:0.09, G:0.04, T:0.56


Consensus pattern (24 bp):   
TTCAATTAAATTATGTTTATTTAC

Done.