Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001841.1 Kokia drynarioides strain JFW-HI SEQ_113591, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3701
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34


Found at i:1144 original size:24 final size:24

Alignment explanation


    Indices: 1125--1173  Score: 71
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1115 CTATAAATGG

                                    
       1125 CATAAAAAACAAATAAATAAAATA
          1 CATAAAAAACAAATAAATAAAATA

                     *         *     
       1149 CATAAAAAATAAATAAGATTAAATA
          1 CATAAAAAACAAATAA-ATAAAATA

       1174 AAGGCAAGAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  24   15  0.68
  25    7  0.32

ACGTcount: A:0.71, C:0.06, G:0.02, T:0.20


Consensus pattern (24 bp):   
CATAAAAAACAAATAAATAAAATA
Done.