Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001843.1 Kokia drynarioides strain JFW-HI SEQ_113595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4141
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29


Found at i:435 original size:80 final size:79

Alignment explanation


    Indices: 337--486  Score: 246
    Period size: 80  Copynumber: 1.9  Consensus size: 79

        327 AGGAGAAATA

                         *                                   *     *         
        337 CCATGCCTTTTCAGCTACATCAGATCCTAATGAAGAGACATGACTCATTGGCTTTTCTACAAGAG
          1 CCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGC-TTCCTACAAGAG

                           
        402 TTAAAAACGAAATTT
         65 TTAAAAACGAAATTT

                       *                                              *      
        417 CCATGCCTTTTTAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTATAAGAGT
          1 CCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTACAAGAGT

                 
        482 TAAAA
         66 TAAAA

        487 TGAAATTAGT


Statistics
Matches: 65,  Mismatches: 5, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  79   16  0.25
  80   49  0.75

ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30


Consensus pattern (79 bp):   
CCATGCCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCTACAAGAGT
TAAAAACGAAATTT
Done.