Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001846.1 Kokia drynarioides strain JFW-HI SEQ_113600, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1989
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.32


Found at i:1925 original size:24 final size:24

Alignment explanation


    Indices: 1880--1926  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1870 CATTCTTCTC

                       *     *      
       1880 CTCCACCACCCTACCATTACAAGT
          1 CTCCACCACCCCACCATCACAAGT

                                    
       1904 CTCCACCACCACCACCA-CACAAG
          1 CTCCACCACC-CCACCATCACAAG

       1927 GAGCCTTACA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  24   15  0.75
  25    5  0.25

ACGTcount: A:0.32, C:0.51, G:0.04, T:0.13


Consensus pattern (24 bp):   
CTCCACCACCCCACCATCACAAGT
Done.