Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001851.1 Kokia drynarioides strain JFW-HI SEQ_113607, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36


Found at i:34 original size:15 final size:15

Alignment explanation


    Indices: 16--82  Score: 89
    Period size: 15  Copynumber: 4.5  Consensus size: 15

          6 GGGTAGTTTA

                           
         16 TAATTGGGCCATTTG
          1 TAATTGGGCCATTTG

                        * *
         31 TAATTGGGCCATCTA
          1 TAATTGGGCCATTTG

               *     *     
         46 TAACTGGGCTATTTG
          1 TAATTGGGCCATTTG

             *             
         61 TTATTGGGCCATTTG
          1 TAATTGGGCCATTTG

                   
         76 TAATTGG
          1 TAATTGG

         83 ACTTTGTTTT


Statistics
Matches: 42,  Mismatches: 10, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  15   42  1.00

ACGTcount: A:0.21, C:0.13, G:0.25, T:0.40


Consensus pattern (15 bp):   
TAATTGGGCCATTTG

Found at i:137 original size:17 final size:16

Alignment explanation


    Indices: 115--170  Score: 67
    Period size: 17  Copynumber: 3.4  Consensus size: 16

        105 TTGGACTTTC

                     *       
        115 TAAATTTAATTTTATAA
          1 TAAATTTAAATTTA-AA

                             
        132 TAAATTTAAATTTAAAA
          1 TAAATTTAAATTT-AAA

               **           
        149 TAACCTTAAATTTAAA
          1 TAAATTTAAATTTAAA

                  
        165 TAAATT
          1 TAAATT

        171 CAATTTCCAA


Statistics
Matches: 33,  Mismatches: 5, Indels: 3
        0.80            0.12        0.07

Matches are distributed among these distances:
  16    7  0.21
  17   25  0.76
  18    1  0.03

ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45


Consensus pattern (16 bp):   
TAAATTTAAATTTAAA
Done.