Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001857.1 Kokia drynarioides strain JFW-HI SEQ_113614, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7502
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35


Found at i:1271 original size:27 final size:27

Alignment explanation


    Indices: 1240--1295  Score: 94
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1230 ATTATTTATG

                     *                 
       1240 TAATTTACCGTTATTTATGTAATCTTT
          1 TAATTTACCCTTATTTATGTAATCTTT

                                *      
       1267 TAATTTACCCTTATTTATGTGATCTTT
          1 TAATTTACCCTTATTTATGTAATCTTT

              
       1294 TA
          1 TA

       1296 TATATTTTAT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.25, C:0.12, G:0.07, T:0.55


Consensus pattern (27 bp):   
TAATTTACCCTTATTTATGTAATCTTT

Found at i:3987 original size:23 final size:23

Alignment explanation


    Indices: 3961--4006  Score: 58
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3951 TTTAGGGAAG

                                    
       3961 TTAAATTACAA-TTTTATTATATA
          1 TTAAATTACAATTTTTATT-TATA

                *   *              
       3984 TTAATTTATAATTTTTATTTATA
          1 TTAAATTACAATTTTTATTTATA

       4007 AGAAGATTGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  23   13  0.65
  24    7  0.35

ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59


Consensus pattern (23 bp):   
TTAAATTACAATTTTTATTTATA
Done.