Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001860.1 Kokia drynarioides strain JFW-HI SEQ_113622, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3283
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32


Found at i:2972 original size:20 final size:20

Alignment explanation


    Indices: 2944--2981  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2934 TATTAAAATA

                                 
       2944 ATACAAAAA-ATATATATTAT
          1 ATACAAAAATA-ATATATTAT

                *             
       2964 ATACCAAAATAATATATT
          1 ATACAAAAATAATATATT

       2982 CTCTCCATTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  20   15  0.94
  21    1  0.06

ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34


Consensus pattern (20 bp):   
ATACAAAAATAATATATTAT

Found at i:3203 original size:27 final size:27

Alignment explanation


    Indices: 3144--3209  Score: 69
    Period size: 27  Copynumber: 2.4  Consensus size: 27

       3134 GGTACAAGGG

                      * *              
       3144 GTGGTGCCTATCTGACAGGCGGCACCA
          1 GTGGTGCCTACCCGACAGGCGGCACCA

            **                      ** 
       3171 AAGGTGCCTACCCGACAGGCGGCATTA
          1 GTGGTGCCTACCCGACAGGCGGCACCA

                   *    
       3198 GTGGTGCTTACC
          1 GTGGTGCCTACC

       3210 TGGCAGCCTA


Statistics
Matches: 30,  Mismatches: 9, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  27   30  1.00

ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20


Consensus pattern (27 bp):   
GTGGTGCCTACCCGACAGGCGGCACCA
Done.