Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01001861.1 Kokia drynarioides strain JFW-HI SEQ_113624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3482
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Warning! 36 characters in sequence are not A, C, G, or T
Found at i:410 original size:216 final size:216
Alignment explanation
Indices: 1--1692 Score: 2062
Period size: 216 Copynumber: 7.9 Consensus size: 216
* *
1 CCAAGAACAAAGAGAGAAACAATTCTCACGT-ATTAAGTTTTTAATTTAAAGACCAAAACTTGTT
1 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* * * * *
65 TGCAGAATGACAAATTATTTTGACCAAATGGTGCGATTTCCCGAGCATGGAATGTT-TAGAAAAT
66 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAAT
* * * * * * *
129 TGCTCGGAA-GAATAGATCATCTTGAATACTTTAAGGATCCATAGTTATAAAAGAACT-AGTAAA
130 TGCTC-GAAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTAAAAAAGAACTCA-TAAA
* *
192 AGTTTGACAGGTTCGGAACTTTGT
193 AGTTTGACAAGTTCGAAACTTTGT
* * *
216 CCAAGAATAAAGAGAGAAACAATTCTCACGTAAATAAGTTTCTAATTCAAAGACGAAAACTTGTT
1 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* * * *
281 TACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATATTCGAAAAATT
66 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
* * * * *
346 GCTCGAAGGAATGGATCTTGTTGAAAACTTTAGGGAACTGAAGCTAAAAAACAACTCATAAAAGT
131 GCTCGAAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTAAAAAAGAACTCATAAAAGT
* * * * *
411 TTCACAATTTCCAAAGTTCGT
196 TTGACAAGTTCGAAACTTTGT
*
432 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAATACTTGTT
1 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* * * * * * *
497 TGCAAAATGACAAACTATTTAGGCCAAATGATGCGATTTGCTGAGCTTGGAATATTTGAAAATTT
66 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
* * * * * * * * ** *
562 GCTTGAAGGAATGGATCGTCTTGAATAATTTATGGATCCAAAGTTATAAATGAACTTGTAAAATT
131 GCTCGAAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTAAAAAAGAACTCATAAAAGT
* **
627 TTGACAAGTTCGAAAGTTCAT
196 TTGACAAGTTCGAAACTTTGT
*
648 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAACGA-CAATAACTTGT
1 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA-AACTTGT
* * * * * * *
712 TTGCATAACGACAAACTATTTAGACCAAATGATGTGATTTGCCGAGTATCGAATATTC-AGAAAA
65 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAA
* * * * *
776 TTGCT-GAAATGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAAGAA--C-T--
129 TTGCTCG-AAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTA-AAAAAGAACTCATAA
*
835 AA---T-AAAAG-TC-AAACTTTGT
192 AAGTTTGACAAGTTCGAAACTTTGT
* *
854 CCAAGAACAAAGACAGAAACAATTCTCACGTAAATAAGTTTCTAATTCAAAGACCAAAACTTGTT
1 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* *
919 TACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATGTTC-AGAAAAT
66 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAAT
* * * ** * * *
983 TGCTCGAAAGAATAGATCGTCTTGAATACTTTAAAGATCCAAAGTTATAAAAGAACT-AGTAAAA
130 TGCTCGAAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTAAAAAAGAACTCA-TAAAA
* * *
1047 GTTTGACAGGTTTGGAACTTTGT
194 GTTTGACAAGTTCGAAACTTTGT
*
1070 CCAAGAACAAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
1 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* * *
1135 TACAAAATGACAAACTATTTAGACCAGATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATT
66 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
* * * * * *
1200 GCTCGAAGGAATGGATCTTGTTCAATACTTTAGGGAACTGAAGTTAAAAAATAACTAAAAAAAGT
131 GCTCGAAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTAAAAAAGAACTCATAAAAGT
* * * *
1265 TTTACAATTTCGAAAGTTCGT
196 TTGACAAGTTCGAAACTTTGT
* *
1286 CCATGAACAAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
1 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* * **
1351 TTCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCC-AACATGGAATGTTAAAAAAAT
66 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTC-CCGAGCATGGAATGTTCGAAAAAT
* * * *
1415 TGCTCGAAGGAAT-GATCTTGTTGAATACTTTAGCGAACTAAAGTTCAAAAATAACTCATAAAAG
130 TGCTCGAAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTAAAAAAGAACTCATAAAAG
* ** *
1479 TTTTG-CAATTTCGAATGTTCGT
195 -TTTGACAAGTTCGAAACTTTGT
1501 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
1 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* * *
1566 TGCAAAATAACAAACTATTTAGACCAAATGTTGCGATTTCTCGAGCATGGAATGTTCGAAAAATT
66 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
* * *
1631 GCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCATAAA
131 GCTCGAAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTAAAAAAGAACTCATAAA
1693 NNNNNNNNNN
Statistics
Matches: 1291, Mismatches: 158, Indels: 55
0.86 0.11 0.04
Matches are distributed among these distances:
205 7 0.01
206 161 0.12
207 6 0.00
208 5 0.00
209 1 0.00
210 2 0.00
212 2 0.00
213 1 0.00
214 5 0.00
215 231 0.18
216 858 0.66
217 12 0.01
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (216 bp):
CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
GCTCGAAGGAATGGATCTTCTTGAATACTTTAGGGAACTAAAGTTAAAAAAGAACTCATAAAAGT
TTGACAAGTTCGAAACTTTGT
Found at i:2649 original size:216 final size:216
Alignment explanation
Indices: 1831--3482 Score: 1906
Period size: 215 Copynumber: 7.8 Consensus size: 216
1821 GCCGAGCATG
* * ** *
1831 GAATA-TTTAAGGTTCCAAAGTTATAAAAGAACTAGCAAAAAG-TTG-TTAGATTCGGAAGTTCG
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAG-TAAAAGTTTGACAAG-TTCGAAAGTTCG
* *
1893 TCCAAGAACAAAAAGAGAAACAATTCTCACATAAACT-AGTTTTTAATTCAAAGACCAAAACTTG
64 TCCAAGAACAAAGAGAGAAACAATTCTCACGTAAA-TAAGTTTTTAATTCAAAGACCAAAACTTG
* * * * * * * *
1957 TTTACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGAAATGTTCAAAAAA
128 TTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAA
* * * *
2022 TTGCTCTAAAAAATGGATCTTGTT
193 TTGCTCGAAAGAATGGATCGTCTT
* * ** * * * *
2046 GAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTCGACAAGTTC---A-----TC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * * * *
2103 CAAGAATAAAGAGAGAAACAATCCTCACGT-AATAAGTTTTTAATTTAAAGATCAACACTTGTTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * * *
2167 GCAGAATGACAAATTATTTAAATCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATT
131 GCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGA-AAAATT
* * *
2231 GCTTGAAAGAGTAGATCGTCTT
195 GCTCGAAAGAATGGATCGTCTT
* * *
2253 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAACTTCGTC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
* *
2318 CAAGAACAAA-AGAGAAACAATACTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * *
2382 GCAAAATGACAAACTATTTAGGCCAAATGATTCGATTTGCCGAGCATGGAATATTTGAAAAATTG
131 GCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTG
* * *
2447 CTCGAAGGAACGGATCTTCTT
196 CTCGAAAGAATGGATCGTCTT
* * * *
2468 GAATAATTTAAGGATCCAAAGTTATAAAAGAACTTGGAAAAGTTTGACAAGTTCGAAAGTTCGTA
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * *
2533 CAA-ACACAAAGAAAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
66 CAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTT
* * *
2597 TGCTAAATGACAAACTATTTAGACCAAATGATGAGATTTCCCGAGTATGGAATATTCGAAAAATT
130 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATT
*
2662 GCTCGAAGGAATGGATCGTCTT
195 GCTCGAAAGAATGGATCGTCTT
* * * * *
2684 GAATACTTTAAGGATCCAATGTTATGAAAGAACTAG-AAAAATTTGACAAGTTCGTAAGTTCGAC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * *
2748 CAAGAACAAAGAGAGAAGCAATTCTCACGTAAATAAGTTTCTAATTCAACGACCAAAACTTGTTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * * * * *
2813 GCAAAACGACAAACTATTTAGACCAAATTATGCGACTTACCGAGAATGGAAAATTCGGAAAATTG
131 GCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTG
*
2878 -TTGAAATGAATGGATCGTCTT
196 CTCGAAA-GAATGGATCGTCTT
* * * *
2899 GAATACTTTAAGGTTCCAAAGTTATAAAATAACTAGTAAAAGGTTGACAAGTTCGGAAGTTCGTC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
*
2964 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAACA-AACAAAACTTGTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA-AGACCAAAACTTGTT
* * * *
3028 TGCAAAACGACAAACTATTTAGACCAAATGAAGCGATTTCCC-ATGGATGGAATGTTCGAAAAAT
130 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCATGGAATATTCGAAAAAT
* * * *
3092 TGCTCTAAAAAATGGATCTTGTT
194 TGCTCGAAAGAATGGATCGTCTT
* * ** * *
3115 GAATACTTTAGGGAACTGAAG-T-T-AAA-AA--A-T--AA--CT--C--G-T-AAAAGTTCGTC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
* * *
3163 CAAGAACAAAGAGAGAAACAATTCTCCCGT-ATTAAGTTTTTAATTTAAAGACCAAAACTTGTTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * *
3227 GCAGAATGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAAATGTTC-AGAAAA
131 GCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG--GAATATTCGA-AAAA
* *
3291 TTGCTCGAAAGAATAGATCGCCTT
193 TTGCTCGAAAGAATGGATCGTCTT
* * *
3315 GAATACTTTAAGGATCCAATGTTATAAAAGAACTAGTAAAAGTTTGATAAGTTCGAAACTTCGTC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
* *
3380 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTCAAAGACCTAAACTTGTTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
* *
3445 ACAAAATGACAAACTATTTAGACCAAGTGATGCGATTT
131 GCAAAATGACAAACTATTTAGACCAAATGATGCGATTT
Statistics
Matches: 1211, Mismatches: 180, Indels: 89
0.82 0.12 0.06
Matches are distributed among these distances:
197 1 0.00
198 70 0.06
199 40 0.03
200 46 0.04
201 2 0.00
202 1 0.00
203 4 0.00
204 2 0.00
205 1 0.00
206 3 0.00
207 143 0.12
208 28 0.02
209 3 0.00
210 2 0.00
211 1 0.00
212 2 0.00
213 4 0.00
214 24 0.02
215 372 0.31
216 354 0.29
217 44 0.04
218 64 0.05
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (216 bp):
GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTC
CAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTT
GCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTG
CTCGAAAGAATGGATCGTCTT
Found at i:2718 original size:431 final size:432
Alignment explanation
Indices: 1831--3482 Score: 1931
Period size: 431 Copynumber: 3.9 Consensus size: 432
1821 GCCGAGCATG
* * * * *
1831 GAATA-TTTAAGGTTCCAAAGTTATAAAAGAACTAGCAAAAAG-TTGTTAGATTCGGAAGTTCGT
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAG-TAAAAGTTTGATAGGTTCGAAAGTTCGT
* * *
1894 CCAAGAACAAAAAGAGAAACAATTCTCACATAAACTAGTTTTTAATTCAAAGACCAAAACTTGTT
65 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTT
* * * * * ** *
1959 TACAAAATGACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGAAATGTTCAAAAAATT
130 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAAATTCGAAAAATT
* * * * * * ** * * *
2024 GCTCTAAAAAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGT
195 GCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGT
* * *
2089 TCGACAAGTTC---A-----TCCAAGAATAAAGAGAGAAACAATCCTCACGT-AATAAGTTTTTA
260 TTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * * * * * *
2145 ATTTAAAGATCAACACTTGTTTGCAGAATGACAAATTATTTAAATCAAATGATGCGATTTCCCGA
325 ATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA
* * *
2210 GCATGGAATGTTC-AGAAAATTGCTTGAAAGAGTAGATCGTCTT
390 GCATGGAATGTTCGA-AAAATTGCTCGAAAGAATGGATCGTCTT
*
2253 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAACTTCGTC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAAGTTCGTC
*
2318 CAAGAACAAA-AGAGAAACAATACTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * * * *
2382 GCAAAATGACAAACTATTTAGGCCAAATGATTCGATTTGCCGAGCATGGAATATTTGAAAAATTG
131 GCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAAATTCGAAAAATTG
* * * * * *
2447 CTCGAAGGAACGGATCTTCTTGAATAATTTAAGGATCCAAAGTTATAAAAGAACTTGGAAAAGTT
196 CTCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTT
* * *
2512 TGACAAGTTCGAAAGTTCGTACAA-ACACAAAGAAAGAAACAATTCTCACATAAATAAGTTTTTA
261 TGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * *
2576 ATTCAAAGACCAAAAGTTGTTTGCTAAATGACAAACTATTTAGACCAAATGATGAGATTTCCCGA
325 ATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA
* * *
2641 GTATGGAATATTCGAAAAATTGCTCGAAGGAATGGATCGTCTT
390 GCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTT
* * * * * * *
2684 GAATACTTTAAGGATCCAATGTTATGAAAGAACTAG-AAAAATTTGACAAGTTCGTAAGTTCGAC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAAGTTCGTC
* * * *
2748 CAAGAACAAAGAGAGAAGCAATTCTCACGTAAATAAGTTTCTAATTCAACGACCAAAACTTGTTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTT
* * * * * * *
2813 GCAAAACGACAAACTATTTAGACCAAATTATGCGACTTACCGAGAATGGAAAATTCGGAAAATTG
131 GCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAAATTCGAAAAATTG
* * * *
2878 -TTGAAATGAATGGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATAAAATAACTAGTAAAAGG
196 CTCGAAA-GAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGT
*
2942 TTGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
260 TTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * *
3007 ATTCAACA-AACAAAACTTGTTTGCAAAACGACAAACTATTTAGACCAAATGAAGCGATTTCCC-
325 ATTCAA-AGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCG
* * * * *
3070 ATGGATGGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGTT
389 A-GCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTT
* * ** * *
3115 GAATACTTTAGGGAACTGAAG-T-T-AAA-AA--A-T--AA-CTCG-TA------AAAGTTCGTC
1 GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAAGTTCGTC
* *
3163 CAAGAACAAAGAGAGAAACAATTCTCCCGT--ATTAAGTTTTTAATTTAAAGACCAAAACTTGTT
66 CAAGAACAAAGAGAGAAACAATTCTCACGTAAATT-AGTTTTTAATTCAAAGACCAAAACTTGTT
* *
3226 TGCAGAATGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAAATGTTC-AGAAA
130 TGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAAA--TTCGA-AAA
* * *
3290 ATTGCTCGAAAGAATAGATCGCCTTGAATACTTTAAGGATCCAATGTTATAAAAGAACTAGTAAA
192 ATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAA
* * *
3355 AGTTTGATAAGTTCGAAACTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATT
257 AGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * *
3420 TTAATTCAAAGACCTAAACTTGTTTACAAAATGACAAACTATTTAGACCAAGTGATGCGATTT
322 TTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTT
Statistics
Matches: 1056, Mismatches: 149, Indels: 56
0.84 0.12 0.04
Matches are distributed among these distances:
413 2 0.00
414 72 0.07
415 37 0.04
416 174 0.16
417 5 0.00
421 1 0.00
422 176 0.17
423 59 0.06
425 2 0.00
427 2 0.00
428 3 0.00
429 2 0.00
430 63 0.06
431 455 0.43
432 3 0.00
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (432 bp):
GAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAAGTTCGTC
CAAGAACAAAGAGAGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGTTT
GCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGAAAAATTCGAAAAATTG
CTCGAAAGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTT
TGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
TTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
CATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCTT
Done.