Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001869.1 Kokia drynarioides strain JFW-HI SEQ_113634, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8649
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36


Found at i:3610 original size:16 final size:18

Alignment explanation


    Indices: 3584--3616  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       3574 AAAGAAGTGA

                              
       3584 AATATATTTAAT-TTTAT
          1 AATATATTTAATATTTAT

                             
       3601 AATA-ATTTAATATTTA
          1 AATATATTTAATATTTA

       3617 ATACAGATTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    7  0.47
  17    8  0.53

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (18 bp):   
AATATATTTAATATTTAT

Found at i:4590 original size:17 final size:16

Alignment explanation


    Indices: 4558--4591  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 16

       4548 TGGGTTATTG

                       *    
       4558 TTATTGTTATTTTTAT
          1 TTATTGTTATTCTTAT

                             
       4574 TTATTGCTTATTCTTAT
          1 TTATTG-TTATTCTTAT

             
       4591 T
          1 T

       4592 AGTGAAAATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    6  0.38
  17   10  0.62

ACGTcount: A:0.18, C:0.06, G:0.06, T:0.71


Consensus pattern (16 bp):   
TTATTGTTATTCTTAT
Done.