Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001873.1 Kokia drynarioides strain JFW-HI SEQ_113640, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40


Found at i:544 original size:22 final size:22

Alignment explanation


    Indices: 497--545  Score: 55
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        487 AAAAGAGTCG

                *                *
        497 AAAAGAAAAAGTGAAAAAAATT
          1 AAAAAAAAAAGTGAAAAAAATC

                               *   
        519 AAAAAAAAAAGATGAAAAAGA-C
          1 AAAAAAAAAAG-TGAAAAAAATC

                 
        541 AAAAA
          1 AAAAA

        546 TGTGTTTGAG


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  22   15  0.65
  23    8  0.35

ACGTcount: A:0.78, C:0.02, G:0.12, T:0.08


Consensus pattern (22 bp):   
AAAAAAAAAAGTGAAAAAAATC

Found at i:545 original size:23 final size:22

Alignment explanation


    Indices: 497--545  Score: 53
    Period size: 23  Copynumber: 2.2  Consensus size: 22

        487 AAAAGAGTCG

                *               **
        497 AAAAGAAAAAGTGAAAAAAATT
          1 AAAAAAAAAAGTGAAAAAAACA

                               *   
        519 AAAAAAAAAAGATGAAAAAGACA
          1 AAAAAAAAAAG-TGAAAAAAACA

                
        542 AAAA
          1 AAAA

        546 TGTGTTTGAG


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  22   10  0.45
  23   12  0.55

ACGTcount: A:0.78, C:0.02, G:0.12, T:0.08


Consensus pattern (22 bp):   
AAAAAAAAAAGTGAAAAAAACA
Done.