Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001888.1 Kokia drynarioides strain JFW-HI SEQ_113668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2464
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:2167 original size:17 final size:17

Alignment explanation


    Indices: 2145--2182  Score: 67
    Period size: 17  Copynumber: 2.2  Consensus size: 17

       2135 AATTAGTATA

                             
       2145 TTTATTTTCAATTTTAT
          1 TTTATTTTCAATTTTAT

                    *        
       2162 TTTATTTTTAATTTTAT
          1 TTTATTTTCAATTTTAT

                
       2179 TTTA
          1 TTTA

       2183 GTTATGCACA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74


Consensus pattern (17 bp):   
TTTATTTTCAATTTTAT
Done.