Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001894.1 Kokia drynarioides strain JFW-HI SEQ_113678, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7063
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37


Found at i:5278 original size:23 final size:23

Alignment explanation


    Indices: 5252--5296  Score: 63
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       5242 TTTTTCGAAT

                     **            
       5252 TTCGAATTATTCGAATCAAGTTA
          1 TTCGAATTAAACGAATCAAGTTA

                 *                
       5275 TTCGAGTTAAACGAATCAAGTT
          1 TTCGAATTAAACGAATCAAGTT

       5297 GAATTTTTTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  23   19  1.00

ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36


Consensus pattern (23 bp):   
TTCGAATTAAACGAATCAAGTTA

Found at i:5628 original size:57 final size:58

Alignment explanation


    Indices: 5518--5636  Score: 188
    Period size: 57  Copynumber: 2.1  Consensus size: 58

       5508 ACCCATCAGC

                                                                    * 
       5518 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTATTAAAAAACACTCGT
          1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTATTAAAAAACACTCAT

                                                  *          *         
       5576 AAACTAAACCCAAATA-TTTTAAACCCAAATATAATTTTATT-TCTAAATAACACTCAT
          1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTAT-TAAAAAACACTCAT

                
       5633 AAAC
          1 AAAC

       5637 AACTCCTTTT


Statistics
Matches: 57,  Mismatches: 3, Indels: 3
        0.90            0.05        0.05

Matches are distributed among these distances:
  56    1  0.02
  57   40  0.70
  58   16  0.28

ACGTcount: A:0.49, C:0.19, G:0.01, T:0.31


Consensus pattern (58 bp):   
AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTATTAAAAAACACTCAT
Done.