Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001902.1 Kokia drynarioides strain JFW-HI SEQ_113687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5403
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29


Found at i:27 original size:17 final size:16

Alignment explanation


    Indices: 5--46  Score: 66
    Period size: 17  Copynumber: 2.6  Consensus size: 16

          1 TTTC

                            
          5 AAATAAATTTAAATTT
          1 AAATAAATTTAAATTT

                    *        
         21 AAAATAAACTTAAATTT
          1 -AAATAAATTTAAATTT

                     
         38 AAATAAATT
          1 AAATAAATT

         47 CAATTTCCAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  16    8  0.35
  17   15  0.65

ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38


Consensus pattern (16 bp):   
AAATAAATTTAAATTT
Done.